NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,200.4 |
Mean read quality |
11.1 |
Median read length |
4,174.0 |
Median read quality |
11.1 |
Number of reads |
1,183.0 |
Read length N50 |
4,186.0 |
STDEV read length |
371.8 |
Total bases |
4,969,024.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1183 (100.0%) 5.0Mb |
>Q7 |
1183 (100.0%) 5.0Mb |
>Q10 |
1016 (85.9%) 4.3Mb |
>Q12 |
248 (21.0%) 1.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.6 (4195) |
2 |
13.6 (4144) |
3 |
13.6 (4121) |
4 |
13.5 (4266) |
5 |
13.5 (4091) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8944 (12.7) |
2 |
8668 (9.6) |
3 |
8162 (13.3) |
4 |
8138 (11.8) |
5 |
7711 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation