NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,140.5 |
Mean read quality |
11.0 |
Median read length |
4,142.5 |
Median read quality |
11.0 |
Number of reads |
1,990.0 |
Read length N50 |
4,149.0 |
STDEV read length |
174.9 |
Total bases |
8,239,630.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1990 (100.0%) 8.2Mb |
>Q7 |
1990 (100.0%) 8.2Mb |
>Q10 |
1642 (82.5%) 6.8Mb |
>Q12 |
413 (20.8%) 1.7Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.9 (4241) |
2 |
13.8 (4065) |
3 |
13.6 (4150) |
4 |
13.5 (4146) |
5 |
13.4 (4179) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4927 (10.4) |
2 |
4860 (11.7) |
3 |
4833 (11.6) |
4 |
4820 (11.0) |
5 |
4802 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation