NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,174.8 |
Mean read quality |
11.0 |
Median read length |
4,144.5 |
Median read quality |
11.0 |
Number of reads |
2,014.0 |
Read length N50 |
4,154.0 |
STDEV read length |
393.4 |
Total bases |
8,407,993.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2014 (100.0%) 8.4Mb |
>Q7 |
2014 (100.0%) 8.4Mb |
>Q10 |
1661 (82.5%) 7.0Mb |
>Q12 |
415 (20.6%) 1.8Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.9 (4241) |
2 |
13.8 (4065) |
3 |
13.6 (4150) |
4 |
13.5 (4146) |
5 |
13.4 (4179) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
10422 (10.6) |
2 |
8694 (12.6) |
3 |
8627 (9.9) |
4 |
8423 (10.0) |
5 |
8358 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation