NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,114.4 |
Mean read quality |
11.2 |
Median read length |
4,103.0 |
Median read quality |
11.2 |
Number of reads |
1,156.0 |
Read length N50 |
4,109.0 |
STDEV read length |
177.9 |
Total bases |
4,756,265.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1156 (100.0%) 4.8Mb |
>Q7 |
1156 (100.0%) 4.8Mb |
>Q10 |
999 (86.4%) 4.1Mb |
>Q12 |
252 (21.8%) 1.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.7 (4091) |
2 |
13.5 (4256) |
3 |
13.4 (3967) |
4 |
13.3 (4268) |
5 |
13.3 (4275) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4947 (11.1) |
2 |
4821 (11.1) |
3 |
4810 (12.9) |
4 |
4787 (11.1) |
5 |
4780 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation