NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,149.9 |
Mean read quality |
11.1 |
Median read length |
4,113.0 |
Median read quality |
11.1 |
Number of reads |
1,562.0 |
Read length N50 |
4,126.0 |
STDEV read length |
340.2 |
Total bases |
6,482,082.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1562 (100.0%) 6.5Mb |
>Q7 |
1562 (100.0%) 6.5Mb |
>Q10 |
1341 (85.9%) 5.6Mb |
>Q12 |
334 (21.4%) 1.4Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (4163) |
2 |
13.7 (4282) |
3 |
13.6 (4218) |
4 |
13.6 (4367) |
5 |
13.5 (3940) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8597 (11.5) |
2 |
8471 (10.8) |
3 |
8471 (9.3) |
4 |
8203 (10.2) |
5 |
8200 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation