NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,149.2 |
Mean read quality |
11.0 |
Median read length |
4,146.0 |
Median read quality |
10.9 |
Number of reads |
1,919.0 |
Read length N50 |
4,155.0 |
STDEV read length |
191.1 |
Total bases |
7,962,390.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1919 (100.0%) 8.0Mb |
>Q7 |
1919 (100.0%) 8.0Mb |
>Q10 |
1533 (79.9%) 6.4Mb |
>Q12 |
365 (19.0%) 1.5Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (4033) |
2 |
13.6 (4206) |
3 |
13.6 (4378) |
4 |
13.6 (4256) |
5 |
13.5 (4191) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4988 (11.5) |
2 |
4924 (11.4) |
3 |
4897 (10.7) |
4 |
4896 (10.7) |
5 |
4865 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation