NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,177.5 |
Mean read quality |
11.0 |
Median read length |
4,147.0 |
Median read quality |
10.9 |
Number of reads |
1,936.0 |
Read length N50 |
4,158.0 |
STDEV read length |
379.6 |
Total bases |
8,087,639.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1936 (100.0%) 8.1Mb |
>Q7 |
1936 (100.0%) 8.1Mb |
>Q10 |
1547 (79.9%) 6.5Mb |
>Q12 |
367 (19.0%) 1.6Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (4033) |
2 |
13.6 (4206) |
3 |
13.6 (4378) |
4 |
13.6 (4256) |
5 |
13.5 (4191) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8977 (10.7) |
2 |
8822 (12.0) |
3 |
8772 (11.3) |
4 |
8655 (10.0) |
5 |
8592 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation