NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,125.3 |
Mean read quality |
10.9 |
Median read length |
4,131.0 |
Median read quality |
10.8 |
Number of reads |
3,561.0 |
Read length N50 |
4,143.0 |
STDEV read length |
201.6 |
Total bases |
14,690,368.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3561 (100.0%) 14.7Mb |
>Q7 |
3561 (100.0%) 14.7Mb |
>Q10 |
2815 (79.1%) 11.7Mb |
>Q12 |
521 (14.6%) 2.2Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.0 (4365) |
2 |
13.9 (4286) |
3 |
13.8 (4324) |
4 |
13.7 (3857) |
5 |
13.7 (4035) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4792 (12.5) |
2 |
4703 (11.7) |
3 |
4700 (10.4) |
4 |
4661 (11.8) |
5 |
4660 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation