NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,158.9 |
Mean read quality |
10.9 |
Median read length |
4,134.0 |
Median read quality |
10.8 |
Number of reads |
3,596.0 |
Read length N50 |
4,148.0 |
STDEV read length |
411.2 |
Total bases |
14,955,405.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3596 (100.0%) 15.0Mb |
>Q7 |
3596 (100.0%) 15.0Mb |
>Q10 |
2845 (79.1%) 11.9Mb |
>Q12 |
524 (14.6%) 2.2Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.0 (4365) |
2 |
13.9 (4286) |
3 |
13.8 (4324) |
4 |
13.7 (3857) |
5 |
13.7 (4035) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
11396 (10.5) |
2 |
8972 (10.6) |
3 |
8784 (10.4) |
4 |
8613 (13.1) |
5 |
8551 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation