NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,189.6 |
Mean read quality |
10.9 |
Median read length |
4,204.0 |
Median read quality |
10.9 |
Number of reads |
9,201.0 |
Read length N50 |
4,212.0 |
STDEV read length |
187.0 |
Total bases |
38,548,622.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
9201 (100.0%) 38.5Mb |
>Q7 |
9201 (100.0%) 38.5Mb |
>Q10 |
7380 (80.2%) 31.1Mb |
>Q12 |
1288 (14.0%) 5.5Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.3 (4325) |
2 |
14.1 (4349) |
3 |
13.9 (4345) |
4 |
13.9 (4415) |
5 |
13.8 (3862) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4995 (10.2) |
2 |
4962 (10.3) |
3 |
4940 (11.0) |
4 |
4892 (10.4) |
5 |
4874 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation