NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,205.2 |
Mean read quality |
10.9 |
Median read length |
4,205.0 |
Median read quality |
10.9 |
Number of reads |
9,255.0 |
Read length N50 |
4,214.0 |
STDEV read length |
339.1 |
Total bases |
38,919,100.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
9255 (100.0%) 38.9Mb |
>Q7 |
9255 (100.0%) 38.9Mb |
>Q10 |
7422 (80.2%) 31.4Mb |
>Q12 |
1293 (14.0%) 5.5Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.3 (4325) |
2 |
14.1 (4349) |
3 |
13.9 (4345) |
4 |
13.9 (4415) |
5 |
13.8 (3862) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
23319 (8.0) |
2 |
8923 (11.7) |
3 |
8694 (11.7) |
4 |
8612 (11.2) |
5 |
8485 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation