NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,125.1 |
Mean read quality |
11.0 |
Median read length |
4,123.0 |
Median read quality |
11.0 |
Number of reads |
4,045.0 |
Read length N50 |
4,132.0 |
STDEV read length |
198.1 |
Total bases |
16,685,916.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4045 (100.0%) 16.7Mb |
>Q7 |
4045 (100.0%) 16.7Mb |
>Q10 |
3320 (82.1%) 13.7Mb |
>Q12 |
719 (17.8%) 3.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.8 (4332) |
2 |
13.7 (4453) |
3 |
13.7 (4041) |
4 |
13.7 (3905) |
5 |
13.6 (4366) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4830 (11.1) |
2 |
4803 (10.8) |
3 |
4794 (12.3) |
4 |
4770 (12.4) |
5 |
4762 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation