NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,100.9 |
Mean read quality |
10.9 |
Median read length |
4,099.0 |
Median read quality |
10.9 |
Number of reads |
6,465.0 |
Read length N50 |
4,105.0 |
STDEV read length |
171.5 |
Total bases |
26,512,123.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
6465 (100.0%) 26.5Mb |
>Q7 |
6465 (100.0%) 26.5Mb |
>Q10 |
5159 (79.8%) 21.3Mb |
>Q12 |
990 (15.3%) 4.2Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.3 (4287) |
2 |
14.3 (4168) |
3 |
14.2 (4147) |
4 |
14.1 (4265) |
5 |
14.0 (4110) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4962 (10.2) |
2 |
4934 (11.5) |
3 |
4912 (11.4) |
4 |
4887 (9.7) |
5 |
4870 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation