NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,111.5 |
Mean read quality |
10.9 |
Median read length |
4,100.0 |
Median read quality |
10.9 |
Number of reads |
6,486.0 |
Read length N50 |
4,107.0 |
STDEV read length |
260.9 |
Total bases |
26,667,313.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
6486 (100.0%) 26.7Mb |
>Q7 |
6486 (100.0%) 26.7Mb |
>Q10 |
5174 (79.8%) 21.4Mb |
>Q12 |
992 (15.3%) 4.2Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
14.3 (4287) |
2 |
14.3 (4168) |
3 |
14.2 (4147) |
4 |
14.1 (4265) |
5 |
14.0 (4110) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
9442 (10.2) |
2 |
8538 (11.8) |
3 |
8523 (9.9) |
4 |
8395 (13.1) |
5 |
8217 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation