NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,153.4 |
Mean read quality |
11.0 |
Median read length |
4,123.0 |
Median read quality |
11.0 |
Number of reads |
1,688.0 |
Read length N50 |
4,133.0 |
STDEV read length |
224.3 |
Total bases |
7,010,864.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1688 (100.0%) 7.0Mb |
>Q7 |
1688 (100.0%) 7.0Mb |
>Q10 |
1385 (82.0%) 5.8Mb |
>Q12 |
299 (17.7%) 1.3Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.7 (4301) |
2 |
13.7 (4147) |
3 |
13.7 (4218) |
4 |
13.7 (4179) |
5 |
13.6 (4156) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4903 (11.5) |
2 |
4871 (12.7) |
3 |
4851 (11.1) |
4 |
4850 (11.3) |
5 |
4847 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation