NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,175.2 |
Mean read quality |
11.0 |
Median read length |
4,124.5 |
Median read quality |
11.0 |
Number of reads |
1,700.0 |
Read length N50 |
4,136.0 |
STDEV read length |
353.2 |
Total bases |
7,097,921.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
1700 (100.0%) 7.1Mb |
>Q7 |
1700 (100.0%) 7.1Mb |
>Q10 |
1392 (81.9%) 5.8Mb |
>Q12 |
299 (17.6%) 1.3Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
13.7 (4301) |
2 |
13.7 (4147) |
3 |
13.7 (4218) |
4 |
13.7 (4179) |
5 |
13.6 (4156) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8788 (8.9) |
2 |
8531 (11.1) |
3 |
8155 (11.7) |
4 |
7974 (11.6) |
5 |
7805 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation