NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,263.1 |
Mean read quality |
10.2 |
Median read length |
4,263.0 |
Median read quality |
10.3 |
Number of reads |
18,833.0 |
Read length N50 |
4,272.0 |
STDEV read length |
215.0 |
Total bases |
80,287,873.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
18833 (100.0%) 80.3Mb |
>Q7 |
18833 (100.0%) 80.3Mb |
>Q10 |
12398 (65.8%) 53.1Mb |
>Q12 |
8 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.3 (4061) |
2 |
12.2 (4402) |
3 |
12.2 (4277) |
4 |
12.1 (4073) |
5 |
12.1 (4303) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4997 (9.7) |
2 |
4984 (10.6) |
3 |
4976 (9.2) |
4 |
4928 (11.0) |
5 |
4915 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation