NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,264.7 |
Mean read quality |
10.2 |
Median read length |
4,263.0 |
Median read quality |
10.3 |
Number of reads |
18,861.0 |
Read length N50 |
4,273.0 |
STDEV read length |
219.2 |
Total bases |
80,437,308.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
18861 (100.0%) 80.4Mb |
>Q7 |
18860 (100.0%) 80.4Mb |
>Q10 |
12412 (65.8%) 53.2Mb |
>Q12 |
8 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.3 (4061) |
2 |
12.2 (4402) |
3 |
12.2 (4277) |
4 |
12.1 (4073) |
5 |
12.1 (4303) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5694 (9.9) |
2 |
5657 (10.7) |
3 |
5652 (9.4) |
4 |
5618 (10.0) |
5 |
5604 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation