NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,224.0 |
Mean read quality |
10.3 |
Median read length |
4,258.0 |
Median read quality |
10.4 |
Number of reads |
9,768.0 |
Read length N50 |
4,259.0 |
STDEV read length |
126.1 |
Total bases |
41,260,450.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
9768 (100.0%) 41.3Mb |
>Q7 |
9768 (100.0%) 41.3Mb |
>Q10 |
6912 (70.8%) 29.3Mb |
>Q12 |
3 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.2 (4280) |
2 |
12.1 (4283) |
3 |
12.0 (4128) |
4 |
12.0 (4170) |
5 |
12.0 (4118) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5713 (9.7) |
2 |
5566 (7.6) |
3 |
5478 (10.0) |
4 |
5356 (10.4) |
5 |
5317 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation