NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,287.8 |
Mean read quality |
10.2 |
Median read length |
4,331.0 |
Median read quality |
10.3 |
Number of reads |
33,590.0 |
Read length N50 |
4,334.0 |
STDEV read length |
157.9 |
Total bases |
144,025,929.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
33590 (100.0%) 144.0Mb |
>Q7 |
33590 (100.0%) 144.0Mb |
>Q10 |
22124 (65.9%) 95.4Mb |
>Q12 |
1 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.1 (4326) |
2 |
11.9 (4332) |
3 |
11.9 (4386) |
4 |
11.9 (4071) |
5 |
11.9 (4360) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4990 (7.5) |
2 |
4970 (8.6) |
3 |
4964 (10.2) |
4 |
4955 (9.3) |
5 |
4945 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation