NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,215.9 |
Mean read quality |
10.2 |
Median read length |
4,225.0 |
Median read quality |
10.3 |
Number of reads |
18,348.0 |
Read length N50 |
4,233.0 |
STDEV read length |
201.8 |
Total bases |
77,353,176.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
18348 (100.0%) 77.4Mb |
>Q7 |
18348 (100.0%) 77.4Mb |
>Q10 |
12392 (67.5%) 52.5Mb |
>Q12 |
4 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.2 (3967) |
2 |
12.2 (4267) |
3 |
12.1 (3959) |
4 |
12.0 (3913) |
5 |
12.0 (4465) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5696 (10.3) |
2 |
5691 (10.6) |
3 |
5661 (9.4) |
4 |
5656 (10.5) |
5 |
5649 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation