NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,108.0 |
Mean read quality |
10.2 |
Median read length |
4,086.0 |
Median read quality |
10.3 |
Number of reads |
52,275.0 |
Read length N50 |
4,089.0 |
STDEV read length |
159.2 |
Total bases |
214,744,354.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
52275 (100.0%) 214.7Mb |
>Q7 |
52275 (100.0%) 214.7Mb |
>Q10 |
34162 (65.4%) 140.9Mb |
>Q12 |
13 (0.0%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.5 (4369) |
2 |
12.2 (4112) |
3 |
12.2 (4088) |
4 |
12.2 (4060) |
5 |
12.1 (4099) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4989 (9.9) |
2 |
4985 (9.5) |
3 |
4983 (9.0) |
4 |
4975 (9.8) |
5 |
4973 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation