NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,109.5 |
Mean read quality |
10.2 |
Median read length |
4,087.0 |
Median read quality |
10.3 |
Number of reads |
52,340.0 |
Read length N50 |
4,089.0 |
STDEV read length |
165.0 |
Total bases |
215,090,056.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
52340 (100.0%) 215.1Mb |
>Q7 |
52339 (100.0%) 215.1Mb |
>Q10 |
34189 (65.3%) 141.1Mb |
>Q12 |
13 (0.0%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.5 (4369) |
2 |
12.2 (4112) |
3 |
12.2 (4088) |
4 |
12.2 (4060) |
5 |
12.1 (4099) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5706 (9.8) |
2 |
5670 (10.0) |
3 |
5669 (8.7) |
4 |
5658 (10.0) |
5 |
5651 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation