NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,201.5 |
Mean read quality |
10.2 |
Median read length |
4,183.0 |
Median read quality |
10.2 |
Number of reads |
31,365.0 |
Read length N50 |
4,195.0 |
STDEV read length |
211.5 |
Total bases |
131,778,534.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
31365 (100.0%) 131.8Mb |
>Q7 |
31365 (100.0%) 131.8Mb |
>Q10 |
20242 (64.5%) 85.5Mb |
>Q12 |
8 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.2 (4390) |
2 |
12.2 (4249) |
3 |
12.1 (4416) |
4 |
12.1 (4217) |
5 |
12.1 (4120) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4994 (7.0) |
2 |
4956 (10.3) |
3 |
4942 (9.2) |
4 |
4935 (10.5) |
5 |
4917 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation