NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,181.3 |
Mean read quality |
10.1 |
Median read length |
4,135.0 |
Median read quality |
10.2 |
Number of reads |
19,583.0 |
Read length N50 |
4,153.0 |
STDEV read length |
227.3 |
Total bases |
81,883,212.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
19583 (100.0%) 81.9Mb |
>Q7 |
19583 (100.0%) 81.9Mb |
>Q10 |
12166 (62.1%) 51.1Mb |
>Q12 |
6 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.1 (4135) |
2 |
12.1 (3994) |
3 |
12.1 (4491) |
4 |
12.1 (4510) |
5 |
12.0 (3966) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4990 (8.7) |
2 |
4989 (10.0) |
3 |
4970 (9.7) |
4 |
4968 (10.4) |
5 |
4967 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation