NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,131.0 |
Mean read quality |
10.2 |
Median read length |
4,102.0 |
Median read quality |
10.3 |
Number of reads |
22,448.0 |
Read length N50 |
4,106.0 |
STDEV read length |
181.1 |
Total bases |
92,732,346.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
22448 (100.0%) 92.7Mb |
>Q7 |
22448 (100.0%) 92.7Mb |
>Q10 |
14719 (65.6%) 61.0Mb |
>Q12 |
10 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.4 (4144) |
2 |
12.2 (4030) |
3 |
12.2 (4037) |
4 |
12.2 (4505) |
5 |
12.1 (4068) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5000 (10.0) |
2 |
4991 (8.9) |
3 |
4975 (11.0) |
4 |
4971 (10.3) |
5 |
4966 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation