NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,152.3 |
Mean read quality |
10.2 |
Median read length |
4,120.0 |
Median read quality |
10.3 |
Number of reads |
30,858.0 |
Read length N50 |
4,130.0 |
STDEV read length |
213.2 |
Total bases |
128,131,186.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
30858 (100.0%) 128.1Mb |
>Q7 |
30858 (100.0%) 128.1Mb |
>Q10 |
20513 (66.5%) 85.5Mb |
>Q12 |
13 (0.0%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.1 (4177) |
2 |
12.1 (4125) |
3 |
12.1 (4038) |
4 |
12.1 (4096) |
5 |
12.1 (4610) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5692 (8.8) |
2 |
5684 (10.9) |
3 |
5679 (9.1) |
4 |
5678 (8.8) |
5 |
5646 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation