NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,318.7 |
Mean read quality |
10.3 |
Median read length |
4,350.0 |
Median read quality |
10.4 |
Number of reads |
16,640.0 |
Read length N50 |
4,365.0 |
STDEV read length |
234.8 |
Total bases |
71,863,719.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
16640 (100.0%) 71.9Mb |
>Q7 |
16640 (100.0%) 71.9Mb |
>Q10 |
11748 (70.6%) 51.0Mb |
>Q12 |
24 (0.1%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.7 (4089) |
2 |
12.4 (4111) |
3 |
12.3 (3803) |
4 |
12.3 (4373) |
5 |
12.3 (4436) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5000 (10.4) |
2 |
5000 (10.8) |
3 |
4999 (9.5) |
4 |
4999 (11.3) |
5 |
4995 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation