NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,337.6 |
Mean read quality |
10.3 |
Median read length |
4,357.0 |
Median read quality |
10.4 |
Number of reads |
16,964.0 |
Read length N50 |
4,373.0 |
STDEV read length |
270.3 |
Total bases |
73,583,164.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
16964 (100.0%) 73.6Mb |
>Q7 |
16963 (100.0%) 73.6Mb |
>Q10 |
11998 (70.7%) 52.3Mb |
>Q12 |
25 (0.1%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.7 (4089) |
2 |
12.4 (4111) |
3 |
12.3 (3803) |
4 |
12.3 (4373) |
5 |
12.3 (4436) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5701 (12.0) |
2 |
5686 (9.5) |
3 |
5680 (11.2) |
4 |
5675 (9.8) |
5 |
5668 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation