NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,314.7 |
Mean read quality |
10.2 |
Median read length |
4,312.0 |
Median read quality |
10.4 |
Number of reads |
42,323.0 |
Read length N50 |
4,328.0 |
STDEV read length |
209.5 |
Total bases |
182,609,129.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
42323 (100.0%) 182.6Mb |
>Q7 |
42319 (100.0%) 182.6Mb |
>Q10 |
28613 (67.6%) 124.0Mb |
>Q12 |
22 (0.1%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.3 (3745) |
2 |
12.2 (4720) |
3 |
12.2 (4284) |
4 |
12.2 (4535) |
5 |
12.2 (4459) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5705 (11.8) |
2 |
5703 (9.3) |
3 |
5701 (9.9) |
4 |
5696 (11.9) |
5 |
5686 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation