NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,311.2 |
Mean read quality |
10.2 |
Median read length |
4,276.0 |
Median read quality |
10.3 |
Number of reads |
8,647.0 |
Read length N50 |
4,276.0 |
STDEV read length |
111.1 |
Total bases |
37,278,799.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
8647 (100.0%) 37.3Mb |
>Q7 |
8647 (100.0%) 37.3Mb |
>Q10 |
5999 (69.4%) 25.9Mb |
>Q12 |
2 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.1 (4579) |
2 |
12.0 (4531) |
3 |
11.9 (4512) |
4 |
11.9 (4563) |
5 |
11.9 (4837) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4971 (11.2) |
2 |
4971 (11.4) |
3 |
4948 (10.4) |
4 |
4938 (10.3) |
5 |
4937 (11.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation