NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,315.5 |
Mean read quality |
10.2 |
Median read length |
4,276.0 |
Median read quality |
10.3 |
Number of reads |
8,684.0 |
Read length N50 |
4,277.0 |
STDEV read length |
129.8 |
Total bases |
37,475,918.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
8684 (100.0%) 37.5Mb |
>Q7 |
8684 (100.0%) 37.5Mb |
>Q10 |
6023 (69.4%) 26.0Mb |
>Q12 |
2 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.1 (4579) |
2 |
12.0 (4531) |
3 |
11.9 (4512) |
4 |
11.9 (4563) |
5 |
11.9 (4837) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5699 (10.5) |
2 |
5606 (9.2) |
3 |
5601 (8.3) |
4 |
5593 (9.6) |
5 |
5581 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation