NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,282.4 |
Mean read quality |
10.1 |
Median read length |
4,304.0 |
Median read quality |
10.2 |
Number of reads |
17,038.0 |
Read length N50 |
4,310.0 |
STDEV read length |
150.9 |
Total bases |
72,963,846.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
17038 (100.0%) 73.0Mb |
>Q7 |
17038 (100.0%) 73.0Mb |
>Q10 |
10642 (62.5%) 45.8Mb |
>Q12 |
5 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.4 (4237) |
2 |
12.3 (4408) |
3 |
12.2 (4375) |
4 |
12.1 (4398) |
5 |
12.0 (4353) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5000 (10.8) |
2 |
4990 (8.0) |
3 |
4979 (10.7) |
4 |
4968 (8.1) |
5 |
4963 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation