NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,285.2 |
Mean read quality |
10.1 |
Median read length |
4,305.0 |
Median read quality |
10.2 |
Number of reads |
17,087.0 |
Read length N50 |
4,310.0 |
STDEV read length |
160.3 |
Total bases |
73,221,886.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
17087 (100.0%) 73.2Mb |
>Q7 |
17086 (100.0%) 73.2Mb |
>Q10 |
10660 (62.4%) 45.9Mb |
>Q12 |
6 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.4 (4237) |
2 |
12.3 (4408) |
3 |
12.2 (4375) |
4 |
12.2 (5068) |
5 |
12.1 (4398) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5687 (10.2) |
2 |
5678 (10.7) |
3 |
5644 (8.9) |
4 |
5636 (8.5) |
5 |
5619 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation