NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,139.6 |
Mean read quality |
10.1 |
Median read length |
4,137.0 |
Median read quality |
10.3 |
Number of reads |
10,683.0 |
Read length N50 |
4,141.0 |
STDEV read length |
141.4 |
Total bases |
44,223,540.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
10683 (100.0%) 44.2Mb |
>Q7 |
10683 (100.0%) 44.2Mb |
>Q10 |
6892 (64.5%) 28.7Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.8 (4107) |
2 |
11.8 (4761) |
3 |
11.8 (4122) |
4 |
11.8 (4312) |
5 |
11.8 (4398) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4841 (10.5) |
2 |
4834 (10.1) |
3 |
4830 (9.6) |
4 |
4798 (10.6) |
5 |
4766 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation