NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,141.4 |
Mean read quality |
10.1 |
Median read length |
4,137.0 |
Median read quality |
10.3 |
Number of reads |
10,700.0 |
Read length N50 |
4,141.0 |
STDEV read length |
148.8 |
Total bases |
44,313,440.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
10700 (100.0%) 44.3Mb |
>Q7 |
10700 (100.0%) 44.3Mb |
>Q10 |
6902 (64.5%) 28.7Mb |
>Q12 |
0 (0.0%) 0.0Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
11.8 (4107) |
2 |
11.8 (4761) |
3 |
11.8 (4122) |
4 |
11.8 (4312) |
5 |
11.8 (4398) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5690 (9.3) |
2 |
5569 (11.2) |
3 |
5569 (10.8) |
4 |
5505 (9.9) |
5 |
5483 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation