NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
4,291.7 |
Mean read quality |
10.3 |
Median read length |
4,333.0 |
Median read quality |
10.4 |
Number of reads |
24,329.0 |
Read length N50 |
4,335.0 |
STDEV read length |
158.1 |
Total bases |
104,411,961.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
24329 (100.0%) 104.4Mb |
>Q7 |
24327 (100.0%) 104.4Mb |
>Q10 |
17595 (72.3%) 75.8Mb |
>Q12 |
18 (0.1%) 0.1Mb |
>Q15 |
0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
12.2 (4312) |
2 |
12.2 (4279) |
3 |
12.2 (4342) |
4 |
12.2 (4352) |
5 |
12.2 (4377) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5685 (9.3) |
2 |
5683 (9.7) |
3 |
5633 (10.8) |
4 |
5612 (10.8) |
5 |
5609 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation