NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,704.0 |
Mean read quality |
42.2 |
Median read length |
2,723.0 |
Median read quality |
36.4 |
Number of reads |
2,548.0 |
Read length N50 |
2,723.0 |
STDEV read length |
79.9 |
Total bases |
6,889,668.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2548 (100.0%) 6.9Mb |
>Q7 |
2548 (100.0%) 6.9Mb |
>Q10 |
2548 (100.0%) 6.9Mb |
>Q12 |
2548 (100.0%) 6.9Mb |
>Q15 |
2548 (100.0%) 6.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2723) |
3 |
93.0 (2723) |
4 |
93.0 (2723) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2773 (23.6) |
2 |
2763 (20.9) |
3 |
2762 (43.3) |
4 |
2760 (43.4) |
5 |
2760 (21.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation