NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,676.1 |
Mean read quality |
42.6 |
Median read length |
2,723.0 |
Median read quality |
36.4 |
Number of reads |
2,711.0 |
Read length N50 |
2,723.0 |
STDEV read length |
360.3 |
Total bases |
7,254,977.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2711 (100.0%) 7.3Mb |
>Q7 |
2711 (100.0%) 7.3Mb |
>Q10 |
2711 (100.0%) 7.3Mb |
>Q12 |
2711 (100.0%) 7.3Mb |
>Q15 |
2711 (100.0%) 7.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (923) |
2 |
93.0 (2723) |
3 |
93.0 (1959) |
4 |
93.0 (2723) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5443 (22.0) |
2 |
5442 (26.7) |
3 |
5440 (27.8) |
4 |
5434 (31.5) |
5 |
5434 (25.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation