NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,519.9 |
Mean read quality |
39.5 |
Median read length |
2,443.0 |
Median read quality |
34.9 |
Number of reads |
4,589.0 |
Read length N50 |
2,505.0 |
STDEV read length |
159.1 |
Total bases |
11,563,969.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4589 (100.0%) 11.6Mb |
>Q7 |
4589 (100.0%) 11.6Mb |
>Q10 |
4589 (100.0%) 11.6Mb |
>Q12 |
4589 (100.0%) 11.6Mb |
>Q15 |
4589 (100.0%) 11.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2723) |
3 |
93.0 (2273) |
4 |
93.0 (2573) |
5 |
93.0 (2515) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2786 (28.5) |
2 |
2780 (21.1) |
3 |
2774 (21.6) |
4 |
2774 (69.4) |
5 |
2768 (42.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation