NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,474.0 |
Mean read quality |
40.0 |
Median read length |
2,432.0 |
Median read quality |
35.0 |
Number of reads |
4,962.0 |
Read length N50 |
2,463.0 |
STDEV read length |
351.3 |
Total bases |
12,276,049.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4962 (100.0%) 12.3Mb |
>Q7 |
4962 (100.0%) 12.3Mb |
>Q10 |
4962 (100.0%) 12.3Mb |
>Q12 |
4962 (100.0%) 12.3Mb |
>Q15 |
4962 (100.0%) 12.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2464) |
2 |
93.0 (2574) |
3 |
93.0 (2274) |
4 |
93.0 (2274) |
5 |
93.0 (2418) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5473 (25.4) |
2 |
5410 (24.0) |
3 |
5407 (32.0) |
4 |
5376 (22.3) |
5 |
5361 (42.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation