NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,388.7 |
Mean read quality |
47.1 |
Median read length |
2,421.5 |
Median read quality |
38.9 |
Number of reads |
414.0 |
Read length N50 |
2,424.0 |
STDEV read length |
208.6 |
Total bases |
988,904.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
414 (100.0%) 1.0Mb |
>Q7 |
414 (100.0%) 1.0Mb |
>Q10 |
414 (100.0%) 1.0Mb |
>Q12 |
414 (100.0%) 1.0Mb |
>Q15 |
414 (100.0%) 1.0Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2427) |
2 |
93.0 (1879) |
3 |
93.0 (2274) |
4 |
93.0 (2274) |
5 |
93.0 (2426) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
4117 (25.8) |
2 |
2641 (20.1) |
3 |
2639 (22.2) |
4 |
2623 (20.7) |
5 |
2617 (35.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation