NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,480.4 |
Mean read quality |
34.8 |
Median read length |
2,434.0 |
Median read quality |
32.3 |
Number of reads |
2,544.0 |
Read length N50 |
2,435.0 |
STDEV read length |
141.0 |
Total bases |
6,310,167.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2544 (100.0%) 6.3Mb |
>Q7 |
2544 (100.0%) 6.3Mb |
>Q10 |
2544 (100.0%) 6.3Mb |
>Q12 |
2544 (100.0%) 6.3Mb |
>Q15 |
2544 (100.0%) 6.3Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2331) |
2 |
93.0 (2344) |
3 |
93.0 (2232) |
4 |
93.0 (2255) |
5 |
93.0 (2388) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2799 (23.8) |
2 |
2797 (39.3) |
3 |
2797 (27.7) |
4 |
2797 (37.1) |
5 |
2797 (33.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation