NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,372.0 |
Mean read quality |
37.1 |
Median read length |
2,430.0 |
Median read quality |
32.8 |
Number of reads |
3,196.0 |
Read length N50 |
2,433.0 |
STDEV read length |
466.8 |
Total bases |
7,580,864.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3196 (100.0%) 7.6Mb |
>Q7 |
3196 (100.0%) 7.6Mb |
>Q10 |
3196 (100.0%) 7.6Mb |
>Q12 |
3196 (100.0%) 7.6Mb |
>Q15 |
3196 (100.0%) 7.6Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (1770) |
2 |
93.0 (328) |
3 |
93.0 (1807) |
4 |
93.0 (1365) |
5 |
93.0 (1518) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
6043 (36.0) |
2 |
5419 (42.2) |
3 |
5096 (20.4) |
4 |
4974 (37.1) |
5 |
4829 (30.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation