NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,630.7 |
Mean read quality |
42.0 |
Median read length |
2,723.0 |
Median read quality |
36.4 |
Number of reads |
3,951.0 |
Read length N50 |
2,723.0 |
STDEV read length |
155.2 |
Total bases |
10,394,044.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3951 (100.0%) 10.4Mb |
>Q7 |
3951 (100.0%) 10.4Mb |
>Q10 |
3951 (100.0%) 10.4Mb |
>Q12 |
3951 (100.0%) 10.4Mb |
>Q15 |
3951 (100.0%) 10.4Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2298) |
2 |
93.0 (2269) |
3 |
93.0 (2502) |
4 |
93.0 (2427) |
5 |
93.0 (2583) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2798 (32.7) |
2 |
2797 (21.0) |
3 |
2795 (33.1) |
4 |
2794 (28.3) |
5 |
2792 (93.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation