NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,613.7 |
Mean read quality |
42.4 |
Median read length |
2,723.0 |
Median read quality |
36.5 |
Number of reads |
4,236.0 |
Read length N50 |
2,723.0 |
STDEV read length |
397.7 |
Total bases |
11,071,483.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
4236 (100.0%) 11.1Mb |
>Q7 |
4236 (100.0%) 11.1Mb |
>Q10 |
4236 (100.0%) 11.1Mb |
>Q12 |
4236 (100.0%) 11.1Mb |
>Q15 |
4236 (100.0%) 11.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2431) |
2 |
93.0 (2425) |
3 |
93.0 (2519) |
4 |
93.0 (2722) |
5 |
93.0 (2100) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
8651 (20.1) |
2 |
5439 (25.7) |
3 |
5436 (21.0) |
4 |
5433 (22.2) |
5 |
5430 (31.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation