NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,420.1 |
Mean read quality |
44.5 |
Median read length |
2,424.0 |
Median read quality |
36.8 |
Number of reads |
5,410.0 |
Read length N50 |
2,427.0 |
STDEV read length |
305.7 |
Total bases |
13,092,936.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
5410 (100.0%) 13.1Mb |
>Q7 |
5410 (100.0%) 13.1Mb |
>Q10 |
5410 (100.0%) 13.1Mb |
>Q12 |
5410 (100.0%) 13.1Mb |
>Q15 |
5410 (100.0%) 13.1Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2427) |
2 |
93.0 (2384) |
3 |
93.0 (2723) |
4 |
93.0 (2270) |
5 |
93.0 (836) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5417 (25.9) |
2 |
5137 (22.6) |
3 |
5119 (28.6) |
4 |
5088 (72.9) |
5 |
4833 (36.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation