NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,665.8 |
Mean read quality |
41.7 |
Median read length |
2,723.0 |
Median read quality |
36.6 |
Number of reads |
3,060.0 |
Read length N50 |
2,723.0 |
STDEV read length |
119.8 |
Total bases |
8,157,251.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3060 (100.0%) 8.2Mb |
>Q7 |
3060 (100.0%) 8.2Mb |
>Q10 |
3060 (100.0%) 8.2Mb |
>Q12 |
3060 (100.0%) 8.2Mb |
>Q15 |
3060 (100.0%) 8.2Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2724) |
2 |
93.0 (2428) |
3 |
93.0 (2723) |
4 |
93.0 (2427) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2773 (35.8) |
2 |
2773 (42.4) |
3 |
2766 (20.1) |
4 |
2764 (24.5) |
5 |
2764 (20.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation