NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,639.4 |
Mean read quality |
41.9 |
Median read length |
2,723.0 |
Median read quality |
36.6 |
Number of reads |
3,215.0 |
Read length N50 |
2,723.0 |
STDEV read length |
299.2 |
Total bases |
8,485,546.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
3215 (100.0%) 8.5Mb |
>Q7 |
3215 (100.0%) 8.5Mb |
>Q10 |
3215 (100.0%) 8.5Mb |
>Q12 |
3215 (100.0%) 8.5Mb |
>Q15 |
3215 (100.0%) 8.5Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2723) |
2 |
93.0 (2520) |
3 |
93.0 (2431) |
4 |
93.0 (2583) |
5 |
93.0 (2427) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
5434 (27.9) |
2 |
5429 (28.7) |
3 |
5424 (68.3) |
4 |
4837 (46.9) |
5 |
4832 (36.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation