NanoPlot statistics report
NanoPlot reports
Summary statistics
General summary |
|
Mean read length |
2,682.7 |
Mean read quality |
41.0 |
Median read length |
2,723.0 |
Median read quality |
36.2 |
Number of reads |
2,205.0 |
Read length N50 |
2,723.0 |
STDEV read length |
109.3 |
Total bases |
5,915,353.0 |
Number, percentage and megabases of reads above quality cutoffs |
|
>Q5 |
2205 (100.0%) 5.9Mb |
>Q7 |
2205 (100.0%) 5.9Mb |
>Q10 |
2205 (100.0%) 5.9Mb |
>Q12 |
2205 (100.0%) 5.9Mb |
>Q15 |
2205 (100.0%) 5.9Mb |
Top 5 highest mean basecall quality scores and their read lengths |
|
1 |
93.0 (2721) |
2 |
93.0 (2723) |
3 |
93.0 (2575) |
4 |
93.0 (2566) |
5 |
93.0 (2723) |
Top 5 longest reads and their mean basecall quality score |
|
1 |
2799 (24.6) |
2 |
2774 (20.9) |
3 |
2772 (26.5) |
4 |
2771 (20.2) |
5 |
2766 (20.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality plot using a kernel density estimation